However, inaccuracies in the pit locations on the CD or CD-R contribute to the PLL clock jitter in the CD player
There is no PLL (Phase Lock Loop) used in a CD player unless it is getting its timing daisy chained down from some external device rather than its own internal clock (say an external SPDIF signal or TosLink signal, however this is not thee usual setup as youu are just using the CD players DAC).
Phase Lock Loops are used between devices in order to maintain synchronization ( for example a CD player and a DSP - the PLL in the DSP will keep in sync with the bit stream from the CD player - some PLL implementations can do a good job of reducing jitter )
Please refer to Page 207 of Nika Aldrich's book "Digital Audio Explained for the Audio Engineer" for an explanatin of a Phase Locked Loop (PLL). I strongly recommend this book to people unfamiliar with digital electronics (you don't need to be an EE to follow it).