I would think that you would tend to run into different types of resonances when changing orientation. Vertical orientation would tend to become more susceptible to air-born vibrations whereas horizontal would be more susceptible to the increased coupling to the rack / support shelf.
If you're looking for the ultimate in isolation, put the components in another room. Unless the system is REALLY rocking, the amount of vibration that the components will have to deal with should be DRASTICALLY reduced. Not convenient, but probably one step higher in terms of lowering the noise floor. Sean
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