Is it better to have the phono stage close to the TT with shorter ic's between the table, or the other way around, or does it matter? I would think the shorter the ic between tt and phono stage would be the better.
Correct, shorter is better, especially on the phono. On MC it is even more important. I have tried short and long with a ARC PH3SE and can always tell the difference.
I used to try and keep phono cable as short as possible (0,5m being sufficient in my system), I was surprised though to find a number of reputable manufacturers offer 1,25m as standard length. At the moment, I am awaiting delivery of a Synergistic Research Tricon for auditioning, Ted Denney actually advised me not to go shorter than 1m with this cable.
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